Postdoctoral Fellow to develop methods for improving functional MRI of the newborn brain

We seek a Postdoctoral Research Fellow to join a dynamic interdisciplinary team of neuroscientists, clinician-researchers, medical biophysicists and computer scientists in the development of assessments of brain function in newborns.

There are many ways that brain injury can be sustained around the time of birth, which can have lifelong consequences for the individual, their family, and society as a whole. It is important to identify early which brain functions are impacted, so that care and intervention can be provided in the critical developmental time window when they are most effective.

The post-holder will adapt methods from pediatric and adult fMRI to improve neonatal neuroimaging. We seek strong, enthusiastic applicants with a background in medical biophysics, physics, engineering, computer science or mathematics. The successful applicant will enjoy working as part of an interdisciplinary team and be able to communicate clearly with those from other areas of expertise.

For further details on the project, see http://www.cusacklab.org/?page_id=976. To apply, please send a detailed CV and a cover letter explaining why this project interests you and how your skills and abilities will contribute, to Professor Rhodri Cusack (vacancies@cusacklab.org) with the subject line “Newborn fMRI”.  The position will initially be for up to two years and at the time of appointment candidates will have obtained (or be about to obtain) a PhD in a relevant discipline. Salary will be in the region of $45,000 per year. Please feel free to contact us if you have any informal enquiries. The selection process will begin on June 1, 2012, and the post will begin in Summer 2012 at the earliest.

Postdoctoral Fellow to develop auditory protocols to probe the function of the newborn brain

We seek a Postdoctoral Research Fellow to join a dynamic interdisciplinary team of neuroscientists, clinician-researchers, medical biophysicists and computer scientists in the development of assessments of brain function in newborns.

There are many ways that brain injury can be sustained around the time of birth, which can have lifelong consequences for the individual, their family, and society as a whole. It is important to identify early which brain functions are impacted, so that care and intervention can be provided in the critical developmental time window when they are most effective.

The post-holder will design auditory stimulation protocols to probe critical cognitive functions using fMRI that can be administered in the first weeks of life. We seek strong applicants with a background in cognitive neuroscience or experimental psychology. The successful applicant will enjoy working as part of an interdisciplinary team and be able to communicate clearly with those from other areas of expertise.

For further details on the project, see http://www.cusacklab.org/?page_id=976. To apply, please send a detailed CV and a cover letter explaining why this project interests you and how your skills and abilities will contribute, to Professor Rhodri Cusack (vacancies@cusacklab.org) with the subject line “Newborn brain function”.   The position will initially be for up to two years and at the time of appointment candidates will have obtained (or be about to obtain) a PhD in a relevant discipline. Salary will be in the region of $45,000 per year. Please feel free to contact us if you have any informal enquiries. The selection process will begin on June 1, 2012, and the successful applicant will begin in Summer 2012 at the earliest.

Research Assistant

We seek a dynamic, well-organized and enthusiastic Research Assistant to join a team developing assessments of brain function in newborns. There are many ways that brain injury can be sustained around the time of birth, which can have lifelong consequences for the individual, their family, and society as a whole. It is important to identify early which brain functions are impacted, so that care and intervention can be provided when they are most effective.

The post-holder’s responsibilities will include: coordinating meetings; organizing project documentation; collating patient data; initiating (and maintaining) contact with parents who have agreed to participate in research projects; visiting families at home to guide them through the testing procedure and answer basic questions; and compiling a quarterly newsletter.

The successful applicant will be: well organized; be able to understand the concerns of parents and provide accurate information to reassure them (or refer questions to members of the team); be enthusiastic and professional; and be able to maintain the confidentiality of private information. Applicants should have a BSc/BA degree (or equivalent).

For further details on the project, see http://www.cusacklab.org/?page_id=976. To apply, please send a detailed CV and a cover letter explaining why this project interests you and how your skills and abilities will contribute, to Associate Professor Rhodri Cusack (vacancies@cusacklab.org) with the subject line “Newborn project RA”.  Salary will be in the region of $35-45,000 per year (including 13% benefits). The post is for 35 hours per week, and will be initially for one year. Please feel free to contact us if you have any informal enquiries. The selection process will begin on June 1, 2012, and the successful applicant will begin in Summer 2012 or soon after.

Three Masters or PhD positions in Medical Biophysics, Neurosciences or Psychology

We seek three graduate students in Medical Biophysics, Neuroscience or Psychology. You will receive training from Western’s highly regarded graduate programs. In your research project, you will join a dynamic interdisciplinary team of neuroscientists, clinician-researchers and computer scientists in the development of assessments of brain function in newborns.

There are many ways that brain injury can be sustained around the time of birth, which can have lifelong consequences for the individual, their family, and society as a whole. It is important to identify early which brain functions are impacted, so that care and intervention can be provided in the critical developmental time window when they are most effective.

The project has two facets: adapting neuroimaging methods from pediatric and adult fMRI to neonates; and designing probes of critical cognitive functions that can be administered in the first weeks of life. For this interdisciplinary challenge we seek strong, enthusiastic applicants with a background in medical biophysics, physics, engineering, computer science or mathematics to develop neuroimaging methodology and applicants with a background in cognitive neuroscience or experimental psychology to develop neurocognitive assessments.

The successful applicants will enjoy working as part of an interdisciplinary team and be able to communicate clearly with those from other areas of expertise.  To apply, please send a detailed CV and a cover letter explaining why this project interests you and how your skills and abilities will contribute, to Professor Rhodri Cusack (vacancies@cusacklab.org) with the subject line “Newborn project graduate student”.  Shortlisted applicants will also be asked to apply to the relevant graduate program. Please feel free to contact us if you have any informal enquiries. Shortlisting will begin on May 25, 2012. Successful applicants will begin courses in Fall 2012.

Grant award: Assessing neonatal brain function with fMRI

The laboratory has been awarded “Collaborative Research Health Project” funding from NSERC and CIHR. The project will develop assessments of neonatal brain injury using functional magnetic resonance imaging (fMRI). There are two main parts to this: adapting neuroimaging methods from adults and children to neonates; and developing stimulation protocols to measure key mental functions that are effective at this age.

The project runs for three years, and will employ three full-time staff, three graduate students, and a number of summer students. These posts will be advertised soon on this site. You can read more about our neonatal work on the Research – Brain & Mind page, and see links to our collaborators on the Collaborators page.

Miscellania: Why is the gray matter confined to a thin ribbon?

Last week my colleague Tutis Vilis wrote: “Recently a student asked me a good question for which I have no good answer. Why is the gray matter confined to a thin ribbon at the surface? Would it not be more efficient in terms of wiring to have a big cube or sphere of gray matter. Do you know of any good answers?”

Here is a trail in quest of the answer. If you have anything to add, please use the “Comment” function.

Reply from Rhodri Cusack

I don’t know, but here are some speculations:

- Cooling: the brain uses a very substantial portion of our energy (20%?). This will ultimately be all turned into heat. It sounds like white matter uses much less energy than grey matter (<0.5% per synapse), so maybe it makes sense to have the grey matter as a sheet on the outside

- Connectivity: perhaps there are just so many connections needed for each piece of grey matter, this is the only way to fit in the wiring?

Reply from Jody Culham

Wiring.  A thin sheet allows you to have lots of wiring to different areas.  See attached figures.  A thin, folded cortex allows lots of wiring across gyri (Van Essen’s theory of compact wiring, which explains mirror maps in retinotopy).  Across a wide range of brain sizes, cortex remains a constant thickness.  This is thought to be because if it gets any thicker, neuron density drops because the white matter takes up too much space.  Also if the cortex is too thick, it’s hard to fold (e.g., folding paper vs. cardboard)… that’s why species like dolphins and whales that have more convoluted cortices have thinner cortices and lower neuronal density than humans.  I can lend you the book these figures are from if you’re interested.

 


Also, here is one of my favorite papers (which I used to do in Neuro 500).  It’s from Jon Kaas and addresses why we don’t just have one large V1 instead of the bazillion little areas.  Argument is related to the above… many areas gives you lots of flexibility in wiring.

One related question I don’t have a ready answer for is why the spinal cord is inverted compared to the cortex — spinal gray matter inside, white matter outside.

Reply from Ravi Menon

Bingo, Jody mentioned the paper by Kaas I was trying to explain to you.

The spinal cord is inverted for obvious reasons. It’s the most compact way to get the wiring to the peripheral limbs and torso. Otherwise the wiring would have to go through the grey matter, which is not efficient from a packing perspective, or from an interneuron communication perspective.

 

TV

I don’t think cooling is the factor. Action potentials are what costs the most energy. These occur in the white matter as well.

But Ravi would know for sure.

RM

Grey matter has 3-4 times the metabolic rate of white matter, as is evident from FDG-PET. So indeed, having the grey matter on the outside likely helps. White matter is very energy efficient in terms of action potential propagation (the benefit of myelin), while the trillions of synapses in grey matter are very energy hungry.

BTW, there is a paper by Dimitry Yablonskiy in PNAS that suggests that grey matter has a marginally higher temperature than white matter and that this goes up with a cognitive task.

I just looked it up and he has a more recent paper too. So Rhodri’s idea about cooling  isn’t so silly.

References

How the body controls brain temperature: the temperature shielding effect of cerebral blood flow.

Coupling between changes in human brain temperature and oxidative metabolism during prolonged visual stimulation.

TV

But it might not be cooling that is the important factor. As Ravi’s article suggests blood flow might be shielding it from too much cold.

But if temperature was the important factor, be it too much heat or much cold, then why have such deep sulci?

But maybe blood flow is part of the answer. Blood enters and leaves the brain from the surface. Perhaps there are limits to the optimal length of a capillary bed.

Ravi, I seem to remember that you have a neat picture of the capillary bed around cortical column. You still have that?

As Jody’s picture points out it is remarkable that the cortex as a constant depth of a millimeter or so spanning species from the rats to a whale.

 

Reply from Adrian Owen

My answer would be ‘how much do you need’? Assuming that what we (well, most of us) have is enough, or at least the right amount, and that you want to allow maximal connectivity between all this gray matter, then a thin ribbon on a densely folded surface is a very efficient way of achieving that. By a ‘big cube or sphere’ I assume you mean a solid volume of gray matter. The problem with that is where do you put all the stuff that connects it all together? And even if you make some room for it, how do you make sure you can connect it ALL together – I think pushing it out towards the surface is the best solution. And to compensate for the loss of (gray matter) volume, fold it up a lot!

 

RM

Heat transfer from blood is the main regulator it seems, and there is 3-4 times as much blood flow in GM vs WM, commensurate with the glucose consumption. So that fits nicely.

It’s not clear that capillary length is a limiting factor. After all, we only drop the oxygenation from 95% to 65% from one end of a capillary to the other. There’s another 65% to go. The reason the pre capillary sphincter is not at 100% oxygenation is that there is some oxygen exchange even at the penetrating arteriole level.

Tutis, the picture I think you are thinking of is a modification I made from Duvernoy. The link to two slides showing the view from the “top” and a sulcus is attached.

 

 

TV

But the brain is very efficient as is the rest of the body. As Rhodri said it produces about 20% of the body’s basal metabolic rate but that amount to only 10 to 15 watts of heat.[\EXPAND]

Grant award: Investigating auditory and visual short-term memory using new neuroimaging methods

The lab has been awarded five years of funding from NSERC to investigate how auditory and visual memories are stored in the brain. Short-term memory is the scratchpad for our thoughts, and is essential for almost all cognitive operations. This project will develop new neuroimaging methods that will characterize the rich representations used to encode memories in the brain, understand how they change in time, and how they differ between people.